This page features models and integrated embeddings of the Census data corpus, organized by CELL×GENE’s level of involvement with their maintenance and availability. These models are breaking new ground and will continue to improve. We encourage you to try out these models and provide feedback!
Please see these tutorials for usage details.
If you’d like to have your project featured here, please get in touch.
CELL×GENE Collaboration Projects
These models and their output embeddings are ongoing collaborations. CZI and the partner labs are improving the models as the Census resource grows. Embeddings are accessible via the Census API; corresponding models are available for download.
Please contact the CELL×GENE team with feedback.
scVI integrated-embeddings with explicit modeling of batch effects
CELLxGENE Discover Team at CZI · Nir Yosef at Weizmann Institute of Science, Israel · Can Ergen & Martin Kim at UC Berkeley
Geneformer embeddings fine-tuned for CELLxGENE Census cell subclass classification
CELLxGENE Discover Team at CZI
The community has also developed many wonderful projects using Census data. While CELL×GENE does not directly host or maintain these projects, we’re excited to showcase them here.
Please contact their creators with questions or feedback.