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Single-cell transcriptomic atlas for adult human retinaBronchopulmonary DysplasiaMulti-Region Brain Single-Cell Atlas of Parkinson's Disease and Control SamplesContext-aware single-cell multiomics approach identifies cell-type specific lung cancer susceptibility genesIBDverse: Cell type-resolved genetic variation shapes inflammatory bowel disease riskHVS: Human variation studyEarly role for a Na+,K+-ATPase (ATP1A3) in brain developmentT cells from gastric cancer patientsSingle cell transcriptional and chromatin accessibility profiling redefine cellular heterogeneity in the adult human kidneyDeterminants of Sensitivity to HER2-targeted Antibody Drug Conjugates in Urothelial CancerWild type adult thymusLongitudinal profiling of respiratory and systemic immune responses reveals myeloid cell-driven lung inflammation in severe COVID-19SARS-CoV-2 receptor ACE2 and TMPRSS2 are primarily expressed in bronchial transient secretory cellsHCA kidney seed network: University of MichiganTranscriptional Programming of Normal and Inflamed Human Epidermis at Single-Cell ResolutionDeciphering glial contributions to CSF1R-related disorder via single-nuclear transcriptomic profilingProfiling the heterogeneity of colorectal cancer consensus molecular subtypes using spatial transcriptomicsA transcriptional cross species map of pancreatic islet cellsSingle-cell RNA sequencing of glioblastoma cases with tissue sampled from tumor core to macroscopically normal cortexComparative Analysis of Commercial Single-Cell RNA Sequencing TechnologiesSingle-soma transcriptomics of tangle-bearing neurons in Alzheimer’s diseaseHuman inflammatory bowel disease (IBD) and healthy control 10x Single-cell transcriptomics dataiPain atlasPathogenic variants damage cell composition and single cell transcription in cardiomyopathiesCell atlas of the human ocular anterior segment: Tissue-specific and shared cell typesThe landscape of immune dysregulation in Crohn’s disease revealed through single-cell transcriptomic profiling in the ileum and colonA spatially resolved single cell genomic atlas of the adult human breastHuman cortical expansion involves diversification and specialization of supragranular intratelencephalic-projecting neuronsSingle-cell and spatial transcriptomics characterisation of the immunological landscape in the healthy and PSC human liverIntratumoral heterogeneity in recurrent pediatric pilocytic astrocytomasAncestral and environmental diversity shape the immune landscape in IndonesiaMapping the temporal and spatial dynamics of the human endometrium in vivo and in vitroIntegrated analysis of multimodal single-cell dataEvolution of cellular diversity in primary motor cortex of human, marmoset monkey, and mouseSingle cell derived mRNA signals across human kidney tumorsSingle cell RNA sequencing of human liver reveals distinct intrahepatic macrophage populationsHTAN/HTAPP Broad - Spatio-molecular dissection of the breast cancer metastatic microenvironmentUrethral luminal epithelia are castration-insensitive cells of the proximal prostateCells of the adult human heartSingle-cell genomics improves the discovery of risk variants and genes of atrial fibrillationSingle-cell reconstruction of follicular remodeling in the human adult ovaryCOVID-19 mRNA vaccine elicits a potent adaptive immune response in the absence of persistent inflammation observed in SARS-CoV-2 infectionThe cellular and molecular cardiac tissue responses in human inflammatory cardiomyopathies after SARS-CoV-2 infection and COVID-19 vaccinationCOVID-19 immune features revealed by a large-scale single-cell transcriptome atlasBlood and immune development in human fetal bone marrow and Down syndromeSingle-cell transcriptome profiling of the human developing spinal cord reveals a conserved genetic programme with human-specific featuresSingle-cell atlas of untreated human triple negative breast cancerUnraveling porcine dendritic-cell diversity: welcome tDC and DC3A molecular single-cell lung atlas of lethal COVID-19Azimuth meta-analysis of human scRNA-seq datasetsSingle-cell analysis of prenatal and postnatal human cortical developmentLungMAP — The genomic, epigenomic and biophysical cues controlling the emergence of the gas exchange niche in the lung.HiPSC-derived retinal organoid subpopulations from healthy and POAG donorsCross-dementia human brain snRNA-seq (Rexach et al 2024)Cortical brain samples from C9-ALS, C9-ALS/FTD, C9-FTD patients and age matched controlsLNCS: Atlas of healthy human lymph nodes with and without ex vivo adjuvant stimulationHarmonized single-cell landscape, intercellular crosstalk and tumor architecture of glioblastomaDefining the cellular and molecular identities of histologic subtypes in lung adenocarcinomaHuman fetal retina atlas v1 - Unraveling the developmental heterogeneity within the human retina to reconstruct the continuity of retinal ganglion cell maturation and stage-specific intrinsic and extrinsic factorsThe integrated Human Lung Cell AtlasCell Atlas of The Human Fovea and Peripheral RetinaMSK SPECTRUM – Ovarian cancer mutational processes drive site-specific immune evasionType I interferon autoantibodies are associated with systemic immune alterations in patients with COVID-19Single-cell RNA-seq analysis reveals cell subsets and gene signatures associated with Rheumatoid Arthritis Disease ActivityCellular and transcriptional diversity over the course of human lactationImmune Response mechanisms in the cerebrospinal fluid in leptomeningeal disease at single cell resolutionSingle cell analysis of mouse and human prostate reveals novel fibroblasts with specialized distribution and microenvironment interactionsSingle-cell transcriptomic atlas of the human retina identifies cell types associated with age-related macular degenerationTranscriptomic Analysis of Air-Liquid Interface Culture in Human Lung Organoids Reveals Regulators of Epithelial DifferentiationA single-cell atlas of human and mouse white adipose tissueMolecular and spatial signatures of mouse brain aging at single-cell resolutionHuman Immune Health AtlasSingle-Cell Atlas Of Human Pediatric Liver Reveals Age-Related Hepatic Gene SignaturesMouse pancreatic islet scRNA-seq atlas across sexes, ages, and stress conditions including diabetesSingle cell RNA sequencing of paw skin from healthy and Col7a1 knockout (RDEB) micePopulation-scale cross-disorder atlas of the human prefrontal cortex at single-cell resolutionMulti-modal skin atlas identifies a multicellular immune-stromal community associated with altered cornification and specific T cell expansion in atopic dermatitisMouse perinatal heart maturation scRNA-seqMulti-omic profiling of the developing human cerebral cortex at the single cell levelA taxonomy of transcriptomic cell types across the isocortex and hippocampal formationStromal cell diversity associated with immune evasion in human triple‐negative breast cancerA molecularly defined and spatially resolved cell atlas of the whole mouse brainMolecular characterization of selectively vulnerable neurons in Alzheimer's DiseaseTranscriptome Analysis of Archived Tumor Tissues by Visium, GeoMx DSP, and Chromium Methods Reveals Inter- and Intra-Patient HeterogeneityMultimodal single cell sequencing implicates chromatin accessibility and genetic background in diabetic kidney disease progressionHuman circulating hematopoietic stem and progenitor cells in aging, cytopenia and MDSTranscriptomic Analysis of the Ocular Posterior Segment Completes a Cell Atlas of the Human EyeCells of the human intestinal tract mapped across space and timeSpatial multiomics map of trophoblast development in early pregnancyGene expression patterns of the developing human and mouse face at single cell resolutionSingle-cell transcriptomes of the human skin reveal age-related loss of fibroblast primingImmune microniches shape intestinal Treg functionPediatric FGID lamina propria of ileum biopsies.A single-cell transcriptional timelapse of mouse embryonic development, from gastrula to pupComparative transcriptomics reveals human-specific cortical featuresSpatiotemporal analysis of human intestinal development at single-cell resolutionSpatial proteogenomics reveals distinct and evolutionarily conserved hepatic macrophage nichesMulti-omic profiling reveals age-related immune dynamics in healthy adultsSingle-cell multiome of the human retina and deep learning nominate causal variants in complex eye diseasesA Cellular Anatomy of the Normal Adult Human Prostate and Prostatic UrethraSingle-cell RNA-seq reveals the cell-type-specific molecular and genetic associations to lupusMapping single-cell transcriptomes in the intra-tumoral and associated territories of kidney cancerEarly lymph node T follicular helper cell signalling hub drives influenza vaccine response in an ancestrally diverse cohortHuman PBMC Glaucoma Atlas - Immune Tolerance to HSP60 Attenuates Neurodegeneration in GlaucomaDysregulation of brain and choroid plexus cell types in severe COVID-19An alternative cell cycle coordinates multiciliated cell differentiationEpithelium-enriched single cell transcriptomes from the ascending colon of pediatric and adult control subjectsIntegration of eQTL and a Single-Cell Atlas in the Human Eye Identifies Causal Genes for Age-Related Macular DegenerationBrain matters: Unveiling the Distinct Contributions of Region, Age, and Sex to Glia diversity and CNS FunctionSingle-cell atlas of peripheral immune response to SARS-CoV-2 infectionMolecular Signatures of Resilience to Alzheimer’s Disease in Neocortical Layer 4 NeuronsA single-cell transcriptional roadmap of the mouse and human lymph node lymphatic vasculatureHigh Resolution Slide-seqV2 Spatial Transcriptomics Enables Discovery of Disease-Specific Cell Neighborhoods and PathwaysProtracted Neuronal Recruitment in the Temporal Lobe of Young ChildrenA transcriptomic atlas of the mouse cerebellum reveals regional specializations and novel cell typesDevelopmental trajectories of thalamic nuclei revealed by single-cell transcriptome profiling and Shh perturbationTabula Microcebus: A transcriptomic cell atlas of mouse lemur, an emerging primate model organismMultiomic Profiling of Human Clonal Hematopoiesis Reveals Genotype and Cell-Specific Inflammatory Pathway ActivationMapping the transcriptional landscape of human white and brown adipogenesis using single-nuclei RNA-seqSEA-AD: Seattle Alzheimer’s Disease Brain Cell AtlasSingle cell dissection of plasma cell heterogeneity in symptomatic and asymptomatic myelomaMolecular, spatial and projection diversity of neurons in primary motor cortex revealed by in situ single-cell transcriptomicsClearing human bone marrow reveals spatial heterogeneity of the stromal niche - Human bone marrow atlasA single-cell atlas of the aging mouse ovarySpatial Transcriptomics Reveal Pitfalls and Opportunities for the Detection of Rare High-Plasticity Breast Cancer SubtypesGateway atlas of living human olfactory epithelium from healthy and neurodegenerative disease donorsSingle-cell transcriptomics of the human retinal pigment epithelium and choroid in health and macular degenerationMultimodal benchmarking dataset for renal cortex characterization (mBDRC)Transcriptional profiling of murine oligodendrocyte precursor cells across the lifespanLungMAP — Human data from a broad age healthy donor groupSingle-cell characterization of the adult male hippocampus suggests a prominent, and cell-type specific, role for Nrgn and Sgk1 in response to a social stressorMapping the developing human immune system across organsIntegrated multi-omic characterization of congenital heart diseaseA molecular cell atlas of COVID-19 initiation in human lungDifferential cell composition and split epidermal differentiation in human palm, sole, and hip skinGeneration of complex human induced pluripotent stem cell-derived bone marrow organoidsSingle-cell genomic profiling of human dopamine neurons identifies a population that selectively degenerates in Parkinson’s diseaseSingle-Nucleus Analysis of Human White Adipose Tissue Reveals Adipocyte Subsets with Distinct Metabolic ProfilesNeuron type-specific effects of human aging and sex on DNA methylation and transcriptionSpatial and cell type transcriptional landscape of human cerebellar developmentHTAN-CHOP - Single-cell multiomics reveals increased plasticity, resistant populations, and stem-cell–like blasts in KMT2A-rearranged leukemiaSingle-cell transcriptomes from human kidneys reveal the cellular identity of renal tumorsHuman Lung Allografts Experience Persistent Fibrogenic Shift Following Acute Cellular RejectionscRNA-seq assessment of the human lung, spleen, and esophagus tissue stability after cold preservationSingle-Cell Analysis of Human Pancreas Reveals Transcriptional Signatures of Aging and Somatic Mutation PatternsA human fetal lung cell atlas uncovers proximal-distal gradients of differentiation and key regulators of epithelial fatesSingle-cell transcriptomic analysis of gingivo-buccal oral cancer reveals two dominant cellular programsSingle-Cell DNA Methylation and 3D Genome Human Brain AtlasEarly human lung immune cell development and its role in epithelial cell fateCyclin replacement hijacks the cell cycle's genetic regulatory program to orchestrate multiciliogenesisCellular heterogeneity and dynamics of the human uterus in healthy premenopausal womenA pancreatic islet scRNA-seq atlas from 48 non-diabetic, prediabetic and type 2 diabetic individuals of matched demographic and ethnic backgroundsTabula Muris SenisSingle-Cell Analysis of Crohn’s Disease Lesions Identifies a Pathogenic Cellular Module Associated with Resistance to Anti-TNF TherapyMolecular and cellular evolution of the primate dorsolateral prefrontal cortexSingle Cell Atlas of Mouse Healthy GingivaCell Types of the Human Retina and Its Organoids at Single-Cell ResolutionSingle-nucleus chromatin accessibility and transcriptomic map of breast tissues of women of diverse genetic ancestrySingle nucleus and spatial transcriptomic profiling of human healthy hamstring tendonPersistent T cell unresponsiveness associated with chronic visceral leishmaniasis in HIV-coinfected patientsSingle Cell Multiome Atlas of the Human Fetal RetinaA molecular cell atlas of the human lung from single cell RNA sequencingSingle Nuclei Atlas of Innervated and Denervated Mouse MuscleCellular atlas of the human ovary using morphologically guided spatial transcriptomics and single-cell sequencingSingle cell atlas of large B-cell lymphomaHuman Brain Cell Atlas v1.0A human cell atlas of fetal gene expressionSingle-cell reconstruction of the adult human heart during heart failure and recovery reveals the cellular landscape underlying cardiac functionPlaque AtlasMassively multiplex chemical transcriptomics at single-cell resolutionA Web Portal and Workbench for Biological Dissection of Single Cell COVID-19 Host ResponsesSpatially organized multicellular immune hubs in human colorectal cancerSingle-cell multiomic analysis of thymocyte development reveals drivers of CD4+ T cell and CD8+ T cell lineage commitmentA Multiomic Timecourse Atlas of Murine Lineage Traced Vascular Smooth Muscle in AtherosclerosisA proximal-to-distal survey of healthy adult human small intestine and colon epithelium by single-cell transcriptomicsConstruction of a human cell landscape at single-cell levelSingle-Cell Sequencing of Developing Human Gut Reveals Transcriptional Links to Childhood Crohn’s DiseaseSpatial multi-omic map of human myocardial infarctionMulti-omic and spatial analysis of mouse kidneys highlights sex-specific differences in gene regulation across the lifespanSingle-cell and spatial mapping Identify cell types and signaling Networks in the human ureterDirect Exposure to SARS-CoV-2 and Cigarette Smoke Increases Infection Severity and Alters the Stem Cell-Derived Airway Repair ResponseBrain vascular single-cell multi-omics elucidates disease risk associationsLocal and systemic responses to SARS-CoV-2 infection in children and adultsAn atlas of healthy and injured cell states and niches in the human kidney (Version 1.5)Identification of distinct tumor cell populations and key genetic mechanisms through single cell sequencing in hepatoblastomaA cell atlas of the human fallopian tube throughout the menstrual cycle and menopauseA Balanced Bone Marrow Reference Map of Hematopoietic DevelopmentDevelopmental Regulation of Endothelial-to-Hematopoietic Transition from iPSCsSingle-cell longitudinal analysis of SARS-CoV-2 infection in human bronchial epithelial cellsDevelopmental Zebrafish Reference AtlasSingle cell atlas of CD19 CAR T-cellsSingle-cell eQTL mapping identifies cell type specific genetic control of autoimmune diseaseSingle-nuclei multi-omics profiling of human ovary reveals coordinated aging signature and pinpoints causal variants underlying timing of natural menopauseProgressive plasticity during colorectal cancer metastasisAdult human skin cells of health and psoriasis vulgarisCharacterizing smoking-induced transcriptional heterogeneity in the human bronchial epithelium at single-cell resolutionHTAN VUMC - Differential pre-malignant programs and microenvironment chart distinct paths to malignancy in human colorectal polypsSmoking modulates different secretory subpopulations expressing SARS-CoV-2 entry genes in the nasal and bronchial airwaysSpatially mapping T cell receptors and transcriptomesA human breast atlas integrating single-cell proteomics and transcriptomicsA multimodal single-cell atlas of the adolescent brain reveals gene regulatory networks linking development to disease riskSpatiotemporal immune zonation of the human kidneyA spatially resolved atlas of the human lung characterizes a gland-associated immune nicheA human embryonic limb cell atlas resolved in space and timeAn atlas of healthy and injured cell states and niches in the human kidneySingle-cell analysis of human B cell maturation predicts how antibody class switching shapes selection dynamicsDissecting novel myeloid-derived cell states through single-cell RNA-Seq and its impact on clinical outcome across tumor typesTabula SapiensSingle cell RNA sequencing of the human embryonic meninges at 5-13 weeks post conceptionSingle-cell integration and multi-modal profiling reveals phenotypes and spatial organization of neutrophils in colorectal cancerSingle-Cell Atlas of Acute Myeloid Leukemia (AML scAtlas)An Atlas of Gene Regulatory Elements in Adult Mouse CerebrumMultimodal profiling reveals tissue-directed signatures of human immune cells altered with ageSampling peripheral blood and matched nasal swabs from donors with prior immunodeficiencies and autoimmune conditions infected with SARS-CoV-2Exploring the Utility of snRNA-seq in Profiling Human Bladder Tissue: A Comprehensive Comparison with scRNA-seqHuman adult and growing molar teethSingle-Cell, Single-Nucleus, and Spatial RNA Sequencing of the Human Liver Identifies Cholangiocyte and Mesenchymal HeterogeneityHuman and mouse dermal fibroblast atlasStress-induced RNA–chromatin interactions promote endothelial dysfunctionCITEseq of JDM PBMCsHypoMap – a unified single cell gene expression atlas of the murine hypothalamusNeural Organoid Hormonal Atlas (NOHA)Cell atlas of antigen-presenting and stromal cells from the human intestineIntegrated cancer cell-specific single-cell RNA-seq datasets of immune checkpoint blockade-treated patientsSingle cell transcriptomic analyses of the dynamic local and systemic response to cardiac injury in mice and zebrafish.Human Breast Cancer Single Cell AtlasSingle nucleus RNA-sequencing defines unexpected diversity of cholinergic neuron types in the adult mouse spinal cordCross-tissue immune cell analysis reveals tissue-specific features in humansA novel human fetal lung-derived alveolar organoid model reveals mechanisms of surfactant protein C maturation relevant to interstitial lung diseaseSingle-nucleus transcriptomic analysis of human dorsal root ganglion neurons.Single cell atlas of the human retinal pigment epithelium and the choroidImmunobiology of Aging Cohort PBMC ProfilingA highly resolved integrated single-cell atlas of HPV-negative Head and Neck CancerTranscriptomic cytoarchitecture reveals principles of human neocortex organizationAsian Immune Diversity Atlas (AIDA)A blood atlas of COVID-19 defines hallmarks of disease severity and specificityMouse Post-Flu Time SeriessnRNA-seq of human kidney with ureteral obstructionSingle-cell Atlas of common variable immunodeficiency shows germinal center-associated epigenetic dysregulation in B-cell responsesTranscriptomic and spatial dissection of human ex vivo right atrial tissue reveals proinflammatory microvascular changes in ischemic heart diseaseIschemia Reperfusion Responses in Human Lung Transplants at the Single Cell ResolutionSingle-cell integration reveals metaplasia in inflammatory gut diseasesMuraro PancreasOrganoid modeling of human fetal lung alveolar development reveals mechanisms of cell fate patterning and neonatal respiratory diseaseSingle-cell transcriptomics of human T cells reveals tissue and activation signatures in health and diseaseSpatial transcriptomic maps of whole mouse embryos reveal principles of neural tube patterningRecruited macrophages elicit atrial fibrillationSingle cell RNA sequencing of bone marrow mononuclear cells from healthy donors and B-cell lymphoma patients following CD19 CAR T-cell therapyUnraveling the spatial landscape of Dystrophinopathies: a transcriptomic approach to Becker and Duchenne muscular dystrophiesResolving cellular and molecular diversity along the hippocampal anterior-to-posterior axis in humansAn integrated transcriptomic and epigenomic atlas of mouse primary motor cortex cell typesAnomalous Epithelial Variations and Ectopic Inflammatory Response in Chronic Obstructive Pulmonary DiseaseSingle-cell analyses of renal cell cancers reveal insights into tumor microenvironment, cell of origin, and therapy responseIntegrated adult and foetal heart single-cell RNA sequencingAdult mouse cortical cell taxonomy revealed by single cell transcriptomicsSingle-cell census of murine glioblastoma subtypesA molecular atlas of the human postmenopausal fallopian tube and ovary from single-cell RNA and ATAC sequencingSingle-cell proteo-genomic reference maps of the hematopoietic system enable the purification and massive profiling of precisely defined cell statesMultiomics single-cell analysis of human pancreatic islets reveals novel cellular states in health and type 1 diabetesCerebellar organoid atlas using microfluidics- and combinatorial barcoding-based technologiesLive Human Microglia Single-cell RNA-seqSingle cell atlas of the human trabecular meshwork and ciliary bodySingle-cell transcriptomics characterization of oligodendrocytes and microglia in white matter agingSingle nuclei RNA- sequencing from the white matter of individuals with progressive MS and non-neurological controlsTime-resolved single-cell analysis of Brca1 associated mammary tumourigenesis reveals aberrant differentiation of luminal progenitorsSingle cell atlas of the human ocular surfaceSingle cell transcriptomic profiling identifies molecular phenotypes of newborn human lung cellsProfiling of epithelial functional states and fibroblast phenotypes in hormone therapy-naïve localised prostate cancerHuman breast cell atlasInsulin is expressed by enteroendocrine cells during human fetal developmentSingle-cell RNA-seq analysis of Interstitial Lung Disease (ILD) subtypesHiPSC-derived retinal pigmented epithelium from healthy and AMD-GA donorsTranscriptional responses of the human dorsal striatum in opioid use disorder implicates cell type-specifc programsSingle cell atlas of spinal cord injury in mice reveals a pro-regenerative signature in spinocerebellar neurons.A single-cell transcriptome atlas of the adult human retinaHigh-resolution single-cell transcriptomic survey of cardiomyocytes from patients with hypertrophic cardiomyopathyHigh-Resolution Transcriptomic Landscape of the Human Submandibular GlandCellular development and evolution of the mammalian cerebellumSingle-Cell Transcriptomic Profiling of Human Dental Pulp in Sound and Carious Teeth: A Pilot StudyAn integrated transcriptomic cell atlas of human neural organoidsAortic Cellular Diversity and Quantitative Genome-Wide Association Study Trait Prioritization Through Single-Nuclear RNA Sequencing of the Aneurysmal Human AortaSingle-cell RNA sequencing data of control and VPA-treated dorsal forebrain organoidsMolecular and cellular dynamics of the developing human neocortex at single-cell resolutionA marmoset brain cell census reveals influence of developmental origin and functional class on neuronal identitySingle-cell transcriptomics reveals gene expression dynamics of human fetal kidney developmentMulti-scale spatial mapping of cell populations across anatomical sites in healthy human skin and basal cell carcinomaHuman developing neocortex by areaTime-resolved Systems Immunology Reveals a Late Juncture Linked to Fatal COVID-19DNA Methylation Atlas of the Mouse Brain at Single-Cell ResolutionEmphysema Cell AtlasALS motor cortex and spinal cord single-nucleus multiome datasetIntegrated scRNA-Seq Identifies Human Postnatal Thymus Seeding Progenitors and Regulatory Dynamics of Differentiating Immature ThymocytesA single-cell transcriptomic atlas spanning the adult rhesus macaque brainSingle cell RNA sequencing of CD19 CAR T-cell infusion productsSingle-cell gene expression profiling of SARS-CoV-2 infected human cell linesHealthy living donor kidneyHTAN CHOP - A longitudinal single-cell atlas of pediatric high-grade glioma.Inflammatory blockade prevents injury to the developing pulmonary gas exchange surface in preterm primatesSingle-Cell RNAseq analysis of diffuse neoplastic infiltrating cells at the migrating front of human glioblastomaA cell atlas of human thymic development defines T cell repertoire formationIntegrated human endoderm-derived organoids cell atlas (HEOCA)HTAN MSK - Transcriptional connectivity of regulatory T cells in the tumor microenvironment informs novel combination cancer therapy strategiesCystic Fibrosis and healthy control biopsyHTAN CHOP - Longitudinal single-cell multiomic atlas of high-risk neuroblastoma reveals chemotherapy-induced tumor microenvironment rewiringHuman subcutaneous and visceral adipocyte atlases uncover classical and non-classical adipocytes and depot-specific patternsCharting human development using a multi-endodermal organ atlas and organoid modelsScaleBio Single Cell RNA Sequencing of Human PBMCsAn Integrated Single Cell Atlas of Human PeriodontitisSingle-cell RNA sequencing unifies developmental programs of Esophageal and Gastric Intestinal MetaplasiaHumoral immunity at the brain borders in homeostasisA single-cell and spatially resolved atlas of human breast cancersSingle-cell reconstruction of the early maternal–fetal interface in humansHigh-resolution single-cell atlas reveals diversity and plasticity of tumor-associated neutrophils in non-small cell lung cancerHuman photoreceptor cells from different macular subregions have distinct transcriptional profilesHuman skeletal muscle ageing atlasAcute COVID-19 cohort across a range of WHO categories seen at the Department of Emergency Medicine at MGHA Unique Cellular Organization of Human Distal Airways and Its Disarray in Chronic Obstructive Pulmonary DiseaseSingle-cell mapping of lymphatic endothelial cells in lymph nodesIntegrative single-cell multi-omics of CD19-CARpos and CARneg T cells suggest drivers of immunotherapy response in B-ALLSingle cell RNA sequencing of follicular lymphomaA cell atlas of the developing human outflow tract of the heart and its adult aortic valve derivativesSingle-cell roadmap of human gonadal developmentSingle-nucleus cross-tissue molecular reference maps to decipher disease gene functionA multi-region single nucleus transcriptomic atlas of Parkinson’s diseaseComprehensive cell atlas of the first-trimester developing human brainMultimodal single-cell profiling reveals neuronal vulnerability and pathological cell states in focal cortical dysplasiaSingle cell atlas of the human optic nerveSex-Specific Control of Human Heart Maturation by the Progesterone ReceptorImpaired local intrinsic immunity to SARS-CoV-2 infection in severe COVID-19Single cell and spatial transcriptomics in Sjögren’s Disease-affected Human Salivary GlandsSingle-Cell Multiomic Atlas of Human Cortical Development in Down SyndromeA Coding and Non-Coding Atlas of the Human Arterial CellCharacterization of the human fetal gonad and reproductive tract by single-cell transcriptomicsDevelopmental cell programs are co-opted in inflammatory skin diseaseA single-cell atlas of innate immunity in treatment-naive juvenile idiopathic arthritisSingle cell atlas of the human retinaEpithelial zonation along the mammalian small intestine defines five discrete metabolic domainsHuman Oral and Craniofacial Cell AtlasCell-type specific analysis of physiological action of estrogen inmouse oviductsImmunophenotyping of COVID-19 and influenza highlights the role of type I interferons in development of severe COVID-19Human Trophoblast OrganoidsiPSC-derived small intestine-on-chip with self-organizing epithelial, mesenchymal and neural cellsThe cellular landscape of breast cancer associated malignant pleural effusionsSpatially resolved multiomics of human cardiac nichesHTAN MSK - Single cell profiling reveals novel tumor and myeloid subpopulations in small cell lung cancerA poly(A) isoform–aware single-cell and spatial atlas defines fibroblast niches in the human bladderAcute response to pathogens in the early human placenta at single-cell resolutionPhenotypic variation of transcriptomic cell types in mouse motor cortexCellular heterogeneity of human fallopian tubes in normal and hydrosalpinx disease states identified by scRNA-seqShared and distinct transcriptomic cell types across neocortical areasSimultaneous profiling of transcription and chromatin accessibility at the single-cell level for postnatal human brain developmentHuman CellCards Multi-Study CellRef 1.0 AtlasCell culture differentiation and proliferation conditions influence the in vitro regeneration of the human airway epitheliumExploring cellular changes in ruptured human quadriceps tendons at single-cell resolutionChromatin accessibility during human first-trimester neurodevelopmentSingle-cell sequencing links multiregional immune landscapes and tissue-resident T cells in ccRCC to tumor topology and therapy efficacyDifferentiation dynamics of mammary epithelial cells revealed by single-cell RNA sequencingDistinct microbial and immune niches of the human colonA single-cell atlas of the healthy breast tissues reveals clinically relevant clusters of breast epithelial cellsType I interferon responsive microglia shape cortical development and behaviorAutomatic cell-type harmonization and integration across Human Cell Atlas datasetsHYPOMAP: A comprehensive spatio-cellularmap of the human hypothalamusSingle-cell multi-omics analysis of the immune response in COVID-19Intra- and Inter-cellular Rewiring of the Human Colon during Ulcerative ColitisThyroid hormone remodels cortex to coordinate body-wide metabolism and explorationCharacterisation of human papillomavirus (HPV)-positive (immune hot) and HPV-negative (immune cold) head and neck tumors by single cell RNA sequencingSingle cell RNA-seq of slice explant cultures of human embryo telencephalon, cultured using the Organotypic Timelapse recording with Transcriptomic Readout (OTTR) protocol for 4-29 daysEx vivo modelling of human colorectal cancer liver metastasis by normothermic machine perfusionSingle-nucleus transcriptome analysis reveals cell-type-specific molecular signatures across reward circuitry in the human brainSingle-cell transcriptome analysis reveals differential nutrient absorption functions in human intestineA non-canonical lymphoblast in refractory childhood T-cell acute leukaemiaUnified comprehensive single-cell atlas of the mouse retinaSingle cell RNA sequencing of pediatric bronchoalveolar lavageA comprehensive mouse kidney atlas enables rare cell population characterization and robust marker discoveryA harmonized atlas of mouse spinal cord cell types and their spatial organization.Single nucleus transcriptomic atlas of human foetal tendonFibroblast specialisation across microanatomy in a single-cell atlas of healthy human Achilles tendonA spatial human thymus cell atlas mapped to a continuous tissue axisCellular and Spatial Drivers of Unresolved Injury and Functional Decline in the Human KidneyHuman γδ T cells in diverse tissues exhibit site-specific maturation dynamics across the lifespan