CELLxGENE logoApplicationCollectionsDatasetsGene ExpressionCell Guide


Downloading Published Data on CZ CELLxGENE Discover

Clicking the download button launches a dialog that enables a dataset to be downloaded in h5ad (AnnData v0.8) and rds (Seurat v5) formats. All datasets adhere to the CELLxGENE single cell annotated data schema.


Click the white Download button for the dataset that you wish to download.


Select either the h5ad (AnnData v0.8) or rds (Seurat v5) download format. Click the blue Download button to download the dataset via the browser. The permanent download link can also be copied, shared, and pasted into a browser address bar.