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  • CellxGene
  • Find Published Data
  • Contribute and Publish Data
  • Download Published Data
  • Analyze Public Data
    • Get Started
    • Hosted Tutorials
    • Gene Expression Documentation
      • Get Started
      • Cell Type and Gene Ordering
      • Gene Expression Data Processing
      • Available Tissues
      • Find Marker Genes
      • Gene Expression Source Data
  • Annotate and Analyze Your Data
    • Get Started
    • Getting Started: Install, Launch, Quick Start
    • Self Host cellxgene
    • Preparing Data
    • Annotating Data
    • Automatic Annotation
    • Gene Sets
    • Community Extensions
    • Multimodal Annotations
  • Join the CellxGene User Community
  • Cite cellxgene in your publications
  • Frequently Asked Questions
  • Learn About Single Cell Data Analysis

Downloading Published Data on CZ CELLxGENE Discover

Clicking the download button launches a dialog that enables a dataset to be downloaded in h5ad (AnnData v0.8) and rds (Seurat v4) formats. All datasets adhere to the CELLxGENE single cell annotated data schema. Datasets can either be downloaded via the browser by clicking the blue download button, or via the command line by pasting the provided curl command.

  1. Select the data set you wish to download.
  1. Make your selections and hit the download button