CELLxGENE logoCollectionsDatasetsGene ExpressionCell Guide

  • CellxGene
  • Find Published Data
  • Contribute and Publish Data
  • Download Published Data
  • Analyze Public Data
    • Get Started
    • Hosted Tutorials
    • Gene Expression Documentation
      • Get Started
      • Cell Type and Gene Ordering
      • Gene Expression Data Processing
      • Available Tissues
      • Find Marker Genes
      • Gene Expression Source Data
  • Annotate and Analyze Your Data
    • Get Started
    • Getting Started: Install, Launch, Quick Start
    • Self Host cellxgene
    • Preparing Data
    • Annotating Data
    • Automatic Annotation
    • Gene Sets
    • Community Extensions
    • Multimodal Annotations
  • Join the CellxGene User Community
  • Cite cellxgene in your publications
  • Frequently Asked Questions
  • Learn About Single Cell Data Analysis

Annotate and Analyze Your Data

Our desktop tool is a powerful interface that allows you to annotate, analyze, and explore your own single cell data.

In this section, you’ll find information about how to run an instance of our desktop application, how to prepare your data, how our annotations function works, and how you can use our gene sets tool to better understand your data.

We believe this is a powerful tool that can help you better understand and trust your data - if you have any questions about how to use this tool, drop us a line at: cellxgene@chanzuckerberg.com